miRBase entry: bta-mir-493

Stem-loop bta-mir-493


Accession
MI0009847
Description
Bos taurus bta-mir-493 precursor miRNA
Gene family
MIPF0000230; mir-493

Literature search
3 open access papers mention bta-mir-493
(4 sentences)

Sequence

5254 reads, 68 reads per million, 63 experiments
cuggcccccagggccuuguacaugguaggcuuucauucauucguuugcacauucggUGAAGGUCUACUGUGUGCCAGGcccugugccag
(((((...((((((((.((((((((((((((((((((.................)))))))))))))))))))).)))))))).)))))

Structure
     ccc        u                    cauucgu 
cuggc   cagggccu guacaugguaggcuuucauu       u
|||||   |||||||| ||||||||||||||||||||       u
gaccg   gucccGGA CGUGUGUCAUCUGGAAGUgg       g
     --u        C                    cuuacac 


Annotation confidence High
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Genome context
chr21: 67695365-67695453 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-493
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-493

Accession MIMAT0009333
Description Bos taurus bta-miR-493 mature miRNA
Sequence 57 - UGAAGGUCUACUGUGUGCCAGG - 78
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125