Stem-loop sequence bta-mir-449c

Accession

MI0009836 (change log)

Description

Bos taurus miR-449c stem-loop

Gene family

MIPF0000133; mir-449

Literature search

7 open access papers mention bta-mir-449c
(16 sentences)

Stem-loop

   aug   --cu        u    ua  c      ucu     u           u 
5'    aag    ugaaugug cagg  gg agugca   cuagc ggcuguuaaaa u
      |||    |||||||| ||||  || ||||||   ||||| ||||||||||| u
3'    uuc    acuuacgu gucu  cc ucacgu   gaucg uugacaauuuu c
   -cg   uaau        u    cc  -      --u     -           u 

Deep sequencing

126 reads, 0 reads per million, 40 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr20: 24042743-24042848 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-449c

• bta-mir-449a: chr20: 24047150-24047237 [+]
• bta-mir-449b: chr20: 24047026-24047123 [+]
• bta-mir-449c: chr20: 24042743-24042848 [-]

Database links

• EntrezGene:MIR449C
• RNAcentral:URS000075C4EF_9913
• miRBase Tracker:MI0009836

Mature sequence bta-miR-449c

• Accession: MIMAT0009322
• Sequence: 23 - aggcagugcaucucuagcugg - 43
• Deep sequencing: 123 reads, 40 experiments
• Evidence: by similarity; MI0004645
• Predicted targets:
  • TargetScanVert:bta-miR-449c

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).