Stem-loop sequence bta-mir-449b

AccessionMI0009835 (change log)
DescriptionBos taurus miR-449b stem-loop
Gene family MIPF0000133; mir-449
Literature search

8 open access papers mention bta-mir-449b
(81 sentences)

Stem-loop 
   ---------uga  u   u     a     u   uu   a c        uu gg 
5'             cc gaa caggu ggcag gua  guu g uggcugcu  g  u
               || ||| ||||| ||||| |||  ||| | ||||||||  |   
3'             gg cuu guuca ccguc cgu  caa c accgacga  u  c
   ucuucuuaaaua  u   c     -     c   --   - -        cu aa
Get sequence
Deep sequencing
952 reads, 0 reads per million, 62 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Btau_5.0.1; GCA_000003205.6) Overlapping transcripts
chr20: 24047026-24047123 [+]
intergenic
Clustered miRNAs
< 10kb from bta-mir-449b
bta-mir-449cchr20: 24042743-24042848 [-]
bta-mir-449bchr20: 24047026-24047123 [+]
bta-mir-449achr20: 24047150-24047237 [+]
Database links

Mature sequence bta-miR-449b

Accession MIMAT0009321
Sequence

16 -  

aggcaguguauuguuagcuggc

 - 37

Get sequence
Deep sequencing949 reads, 62 experiments
Evidence by similarity; MI0003673
Predicted targets

References

1
PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2
PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).