Stem-loop sequence bta-mir-449a

AccessionMI0009834 (change log)
DescriptionBos taurus miR-449a stem-loop
Gene family MIPF0000133; mir-449
Literature search

7 open access papers mention bta-mir-449a
(24 sentences)

Stem-loop 
   ----u   ug     u       -    u          u a  au 
5'      gug  auggg uggcagu guau guuagcuggu g au  g
        |||  ||||| ||||||| |||| |||||||||| | ||   
3'      uac  uauuc aucguca cgua caaucgacua c ug  u
   auaug   gu     u       a    -          c g  ag
Get sequence
Deep sequencing
1016 reads, 0 reads per million, 63 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Btau_5.0.1; GCA_000003205.6) Overlapping transcripts
chr20: 24047150-24047237 [+]
intergenic
Clustered miRNAs
< 10kb from bta-mir-449a
bta-mir-449cchr20: 24042743-24042848 [-]
bta-mir-449bchr20: 24047026-24047123 [+]
bta-mir-449achr20: 24047150-24047237 [+]
Database links

Mature sequence bta-miR-449a

Accession MIMAT0009320
Sequence

13 -  

uggcaguguauuguuagcuggu

 - 34

Get sequence
Deep sequencing1015 reads, 63 experiments
Evidence by similarity; MI0001651
Predicted targets

References

1
PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2
PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).