Stem-loop sequence bta-mir-429

Accession

MI0009829 (change log)

Description

Bos taurus miR-429 stem-loop

Gene family

MIPF0000019; mir-8

Literature search

6 open access papers mention bta-mir-429
(9 sentences)

Stem-loop

   a   u cc        u -          cg       cu  u 
5'  gcc g  gaugggcg c uuaccagaca  guuagau  gg c
    ||| |  |||||||| | ||||||||||  |||||||  ||  
3'  cgg c  cuaccugc g aauggucugu  uaaucug  cu c
   -   - cc        c u          ca       -u  u 

Deep sequencing

59546 reads, 535 reads per million, 75 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr16: 52693343-52693426 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-429

• bta-mir-200b: chr16: 52695246-52695304 [-]
• bta-mir-200a: chr16: 52694578-52694663 [-]
• bta-mir-429: chr16: 52693343-52693426 [-]

Database links

• EntrezGene:MIR429
• RNAcentral:URS000075A033_9913
• miRBase Tracker:MI0009829

Mature sequence bta-miR-429

• Accession: MIMAT0009315
• Sequence: 52 - uaauacugucugguaaugccgu - 73
• Deep sequencing: 59542 reads, 75 experiments
• Evidence: experimental; cloned [3]
• Predicted targets:
  • TargetScanVert:bta-miR-429

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).
3. PMID:19758457 "Characterization of bovine miRNAs by sequencing and bioinformatics analysis" Jin W, Grant JR, Stothard P, Moore SS, Guan LL BMC Mol Biol. 10:90(2009).