miRBase entry: bta-mir-421

Stem-loop bta-mir-421


Accession
MI0009828
Description
Bos taurus bta-mir-421 precursor miRNA
Gene family
MIPF0000098; mir-95

Literature search
3 open access papers mention bta-mir-421
(3 sentences)

Sequence

6968 reads, 115 reads per million, 72 experiments
gcacauuguaggccucauuaaauguuuguugaaugaaaaaaugaaucAUCAACAGACAUUAAUUGGGCGCcugcucugugaucuc
.((((..((((((((((...((((((((((((.(((.........)))))))))))))))...)))).))))))..)))).....

Structure
----g    uu      -    uua            a   aaa 
     caca  guaggc cuca   aauguuuguuga uga   a
     ||||  |||||| ||||   |||||||||||| |||   a
     gugu  cgucCG GGGU   UUACAGACAACU Acu   u
cucua    cu      C    UAA            -   aag 


Annotation confidence High
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Genome context
chrX: 82990081-82990165 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-421
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-421

Accession MIMAT0009314
Description Bos taurus bta-miR-421 mature miRNA
Sequence 48 - AUCAACAGACAUUAAUUGGGCGC - 70
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125