Stem-loop sequence bta-mir-381

Accession

MI0009821 (change log)

Description

Bos taurus miR-381 stem-loop

Gene family

MIPF0000018; mir-154

Literature search

3 open access papers mention bta-mir-381
(8 sentences)

Stem-loop

         g  c   g        u        --g   u 
5' uacuca ag gag uugcccuu guauauuc   guu u
   |||||| || ||| |||||||| ||||||||   |||  
3' augagu uc cuc aacgggaa cauauaag   uag u
         g  u   g        -        aug   u 

Deep sequencing

21633 reads, 120 reads per million, 64 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr21: 67861446-67861520 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-381

• bta-mir-495: chr21: 67851608-67851688 [+]
• bta-mir-154c: chr21: 67853625-67853699 [+]
• bta-mir-376e: chr21: 67856314-67856395 [+]
• bta-mir-376c: chr21: 67856685-67856770 [+]
• bta-mir-376d: chr21: 67857059-67857140 [+]
• bta-mir-654: chr21: 67857212-67857292 [+]
• bta-mir-376b: chr21: 67857435-67857527 [+]
• bta-mir-376a: chr21: 67857794-67857892 [+]
• bta-mir-1185: chr21: 67859743-67859828 [+]
• bta-mir-3956: chr21: 67860482-67860579 [+]
• bta-mir-381: chr21: 67861446-67861520 [+]
• bta-mir-487b: chr21: 67861931-67862014 [+]
• bta-mir-539: chr21: 67862745-67862822 [+]
• bta-mir-544a: chr21: 67864731-67864821 [+]
• bta-mir-655: chr21: 67865688-67865784 [+]
• bta-mir-411c: chr21: 67867851-67867924 [+]
• bta-mir-487a: chr21: 67868237-67868316 [+]
• bta-mir-3578: chr21: 67871246-67871331 [-]
• bta-mir-382: chr21: 67871251-67871326 [+]

Database links

• EntrezGene:MIR381
• miRBase Tracker:MI0009821

Mature sequence bta-miR-381

• Accession: MIMAT0009307
• Sequence: 49 - uauacaagggcaagcucucugu - 70
• Deep sequencing: 21602 reads, 64 experiments
• Evidence: experimental; Array [3], qRT-PCR [3]
• Predicted targets:
  • TargetScanVert:bta-miR-381

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).
3. PMID:19170227 "Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach" Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M Mol Reprod Dev. 76:665-677(2009).