miRBase entry: bta-mir-381

Stem-loop bta-mir-381


Accession
MI0009821
Description
Bos taurus bta-mir-381 precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
3 open access papers mention bta-mir-381
(8 sentences)

Sequence

10480 reads, 186 reads per million, 64 experiments
uacucagagcgagguugcccuuuguauauucgguuuuuugauguagaaUAUACAAGGGCAAGCUCUCUGUgagua
((((((.((.(((.((((((((.((((((((..............)))))))))))))))).))).)).))))))

Structure
      g  c   g        u        gguuuu 
uacuca ag gag uugcccuu guauauuc      u
|||||| || ||| |||||||| ||||||||       
augagU UC CUC AACGGGAA CAUAUaag      u
      G  U   G        -        auguag 


Annotation confidence High
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Genome context
chr21: 67861446-67861520 [+]
Clustered miRNAs
18 other miRNAs are < 10 kb from bta-mir-381
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-381

Accession MIMAT0009307
Description Bos taurus bta-miR-381 mature miRNA
Sequence 49 - UAUACAAGGGCAAGCUCUCUGU - 70
Evidence experimental
Array [3], qRT-PCR [3]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19170227
    Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
    "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
    "Mol Reprod Dev (2009) 76:665-677

  3. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125