Stem-loop sequence bta-mir-365-2

Accession

MI0009812 (change log)

Description

Bos taurus miR-365-2 stem-loop

Gene family

MIPF0000061; mir-365

Literature search

6 open access papers mention bta-mir-365-2
(16 sentences)

Stem-loop

   --a  g   u  aggaca       a        ac   c       -----    u   u 
5'    ga ugc cg      gcaagaa aaugaggg  uuu aggggca     gcug guu u
      || ||| ||      ||||||| ||||||||  ||| |||||||     |||| |||  
3'    cu acg gu      cguucuu uuauuccu  aaa uccccgu     ugac cag c
   gga  -   u  ----ga       g        aa   -       aauac    u   u 

Deep sequencing

6527 reads, 26.9 reads per million, 67 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr19: 18918387-18918497 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-365-2

• bta-mir-2333: chr19: 18920681-18920743 [-]
• bta-mir-365-2: chr19: 18918387-18918497 [-]

Database links

• EntrezGene:MIR365-2
• RNAcentral:URS000075EB6E_9913
• miRBase Tracker:MI0009812

Mature sequence bta-miR-365-3p

• Accession: MIMAT0004341
• Previous IDs: bta-miR-365
• Sequence: 68 - uaaugccccuaaaaauccuuau - 89
• Deep sequencing: 10870 reads, 67 experiments
• Evidence: experimental; cloned [2]
• Predicted targets:
  • TargetScanVert:bta-miR-365-3p

References

1. PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).
2. PMID:19758457 "Characterization of bovine miRNAs by sequencing and bioinformatics analysis" Jin W, Grant JR, Stothard P, Moore SS, Guan LL BMC Mol Biol. 10:90(2009).