miRBase entry: bta-mir-340

Stem-loop bta-mir-340


Accession
MI0009809
Description
Bos taurus bta-mir-340 precursor miRNA
Gene family
MIPF0000191; mir-340

Literature search
2 open access papers mention bta-mir-340
(4 sentences)

Sequence

20667 reads, 252 reads per million, 74 experiments
uuguaccuggugugauuauaaagcaaugagacugauugucaugugucguuugugggaUCCGUCUCAGUUACUUUAUAGCCauaccugguaucuua
..(((((.((((((.((((((((...((((((.((((.(((((.......))))))))).))))))....)))))))).)))))).)))))....

Structure
--uu     u      a        -caa      u    g     ug 
    guacc ggugug uuauaaag    ugagac gauu ucaug  u
    ||||| |||||| ||||||||    |||||| |||| |||||  c
    uaugg ccauaC GAUAUUUC    ACUCUG CUag ggugu  g
auuc     u      C        AUUG      C    -     uu 


Annotation confidence High
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Genome context
chr7: 1160917-1161011 [+]

Database links

Mature bta-miR-340

Accession MIMAT0009296
Description Bos taurus bta-miR-340 mature miRNA
Sequence 58 - UCCGUCUCAGUUACUUUAUAGCC - 80
Evidence experimental
cloned [3]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  3. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125