Stem-loop sequence bta-mir-33a

AccessionMI0009807 (change log)
DescriptionBos taurus miR-33a stem-loop
Gene family MIPF0000070; mir-33
Literature search

17 open access papers mention bta-mir-33a
(61 sentences)

Stem-loop 
      c          a uu          uucu  c 
5' cug ggugcauugu g  gcauugcaug    gg g
   ||| |||||||||| |  ||||||||||    || g
3' gac cuacgugaca c  uguaacgugc    cc u
      a          c uu          ----  a
Get sequence
Deep sequencing
3085 reads, 9.72 reads per million, 72 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (Btau_5.0.1; GCA_000003205.6) Overlapping transcripts
chr5: 113746881-113746949 [+]
sense
ENSBTAT00000018956 ; SREBF2-201; intron 15
Database links

Mature sequence bta-miR-33a

Accession MIMAT0009294
Sequence

6 -  

gugcauuguaguugcauugca

 - 26

Get sequence
Deep sequencing2826 reads, 71 experiments
Evidence by similarity; MI0000091
Predicted targets

References

1
PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2
PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).