miRBase entry: bta-mir-330

Stem-loop bta-mir-330


Accession
MI0009803
Description
Bos taurus bta-mir-330 precursor miRNA
Gene family
MIPF0000200; mir-330

Literature search
2 open access papers mention bta-mir-330
(3 sentences)

Sequence

1231 reads, 52 reads per million, 66 experiments
cuucggcgaucacugccucucugggccugugucuuaggcucugcaagaucaaccgaGCAAAGCACACGGCCUGCAGAGAggcagcgcucagcuc
....(((((.(.(((((((((((((((((((.(((..((((.............)))).))))))).))))..))))))))))).).)).))).

Structure
cuuc   -  u a           --    -    u   ag    ugcaa 
    ggc ga c cugccucucug  ggcc ugug cuu  gcuc     g
    ||| || | |||||||||||  |||| |||| |||  ||||     a
    ucg cu g gacggAGAGAC  CCGG ACAC GAA  CGag     u
---c   a  c c           GU    C    -   -A    ccaac 


Annotation confidence High
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Genome context
chr18: 53898387-53898480 [-]

Database links

Mature bta-miR-330

Accession MIMAT0009290
Description Bos taurus bta-miR-330 mature miRNA
Sequence 57 - GCAAAGCACACGGCCUGCAGAGA - 79
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125