Stem-loop bta-mir-329b

Accession

MI0009802

Description

Bos taurus bta-mir-329b precursor miRNA

Gene family

MIPF0000110; mir-329

Literature search

3 open access papers mention bta-mir-329b
(5 sentences)

Sequence

100 reads, 13 reads per million, 36 experiments

ugguaccugaagAGAGGUUUUCUGGGUUUCUGUUUcuuuaaugaggaugaaacacaccugguuaaccucuuuuccaguaucaa
((((((..(((((((((((..((((((...((((((.((......)).)))))).))))))..)))))))))))..)))))).

Structure

-      cu           UU      UUC      u  aa 
 ugguac  gaagAGAGGUU  CUGGGU   UGUUUc uu  u
 ||||||  |||||||||||  ||||||   |||||| ||   
 acuaug  cuuuucuccaa  ggucca   acaaag ag  g
a      ac           uu      --c      u  ga 

Annotation confidence Not enough data

Genome context

chr21: 67844880-67844962 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from bta-mir-329b

Mature bta-miR-329b

• Accession: MIMAT0009289
• Description: Bos taurus bta-miR-329b mature miRNA
• Sequence: 13 - AGAGGUUUUCUGGGUUUCUGUUU - 35
• Evidence: experimental ; cloned [3]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


3. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125