miRBase entry: bta-mir-29d

Stem-loop bta-mir-29d


Accession
MI0009788
Description
Bos taurus bta-mir-29d precursor miRNA
Gene family
MIPF0000009; mir-29

Literature search
22 open access papers mention bta-mir-29d
(81 sentences)

Sequence

345 reads, 302 reads per million, 67 experiments
aucucuuacacaggcUGACCGAUUUCUCCUGGUGUUcagagucuguuuuugucUAGCACCAUUUGAAAUCGAUUAugauguaggggga
..((((((((((...(((.(((((((...(((((((.(((...........))))))))))...))))))).))))).))))))))..

Structure
au        -  ggc   C       UCC       c   gucu 
  cucuuaca ca   UGA CGAUUUC   UGGUGUU aga    g
  |||||||| ||   ||| |||||||   ||||||| |||    u
  ggggaugu gu   AUU GCUAAAG   ACCACGA Ucu    u
ag        a  ---   A       UUU       -   guuu 


Annotation confidence High
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Genome context
chr16: 77816279-77816366 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-29d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-29d-3p

Accession MIMAT0009275
Description Bos taurus bta-miR-29d-3p mature miRNA
Sequence 54 - UAGCACCAUUUGAAAUCGAUUA - 75
Evidence experimental
cloned [2], Illumina [3]

Mature bta-miR-29d-5p

Accession MIMAT0026919
Description Bos taurus bta-miR-29d-5p mature miRNA
Sequence 16 - UGACCGAUUUCUCCUGGUGUU - 36
Evidence experimental
Illumina [3]

References

  1. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  2. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125

  3. PubMed ID: 23100578
    Profiling of differentially expressed microRNA and the bioinformatic target gene analyses in bovine fast- and slow-type muscles by massively parallel sequencing
    "Muroya S, Taniguchi M, Shibata M, Oe M, Ojima K, Nakajima I, Chikuni K"
    "J Anim Sci (2013) 91:90-103