miRBase entry: bta-mir-26a-1

Stem-loop bta-mir-26a-1


Accession
MI0009784
Description
Bos taurus bta-mir-26a-1 precursor miRNA
Gene family
MIPF0000043; mir-26

Literature search
41 open access papers mention bta-mir-26a-1
(125 sentences)

Sequence

1914699 reads, 21970 reads per million, 78 experiments
aaggccguggccucgUUCAAGUAAUCCAGGAUAGGCUgugcaggucccaaggggccuauucucgguuacuugcacgcggacgcgggccug
.((((((((.((.(((.(((((((((.((((((((((.(...........).)))))))))).))))))))).))).)).))).))))).

Structure
a     -   g  u   U         C          g gcag 
 aggcc gug cc cgU CAAGUAAUC AGGAUAGGCU u    g
 ||||| ||| || ||| ||||||||| |||||||||| |    u
 uccgg cgc gg gca guucauugg ucuuauccgg g    c
g     g   a  c   c         c          g aacc 


Annotation confidence Not enough data
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Genome context
chr22: 11513974-11514063 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-26a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-26a

Accession MIMAT0003516
Description Bos taurus bta-miR-26a mature miRNA
Sequence 16 - UUCAAGUAAUCCAGGAUAGGCU - 37
Evidence experimental
cloned [2-3]

References

  1. PubMed ID: 19267191
    Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
    "Long JE, Chen HX"
    "Biochem Genet (2009) 47:329-343

  2. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  3. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125