Stem-loop sequence bta-mir-224

Accession

MI0009783 (change log)

Description

Bos taurus miR-224 stem-loop

Gene family

MIPF0000088; mir-224

Literature search

13 open access papers mention bta-mir-224
(31 sentences)

Stem-loop

          ca         u   u      a --ua    gu 
5' gggcuuu  agucacuag ggu ccguuu g    gaug  u
   |||||||  ||||||||| ||| |||||| |    ||||   
3' cccgaaa  ucagugauc cca gguaaa c    uuac  g
          ca         -   u      a uuug    au 

Deep sequencing

9675 reads, 22.4 reads per million, 67 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chrX: 34881360-34881440 [-]
• Overlapping transcripts:

  sense

  ENSBTAT00000065531 ; GABRE-201; intron 6

  ENSBTAT00000018017 ; GABRE-202; intron 6

Clustered miRNAs

< 10kb from bta-mir-224

• bta-mir-452: chrX: 34882394-34882478 [-]
• bta-mir-224: chrX: 34881360-34881440 [-]
• bta-mir-3431: chrX: 34879430-34879526 [-]

Database links

• EntrezGene:MIR224
• RNAcentral:URS0000713468_9913
• miRBase Tracker:MI0009783

Mature sequence bta-miR-224

• Accession: MIMAT0009271
• Sequence: 8 - caagucacuagugguuccguuua - 30
• Deep sequencing: 9629 reads, 67 experiments
• Evidence: experimental; cloned [3]
• Predicted targets:
  • TargetScanVert:bta-miR-224

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).
3. PMID:19758457 "Characterization of bovine miRNAs by sequencing and bioinformatics analysis" Jin W, Grant JR, Stothard P, Moore SS, Guan LL BMC Mol Biol. 10:90(2009).