miRBase entry: bta-mir-224

Stem-loop bta-mir-224


Accession
MI0009783
Description
Bos taurus bta-mir-224 precursor miRNA
Gene family
MIPF0000088; mir-224

Literature search
13 open access papers mention bta-mir-224
(31 sentences)

Sequence

8624 reads, 169 reads per million, 66 experiments
gggcuuuCAAGUCACUAGUGGUUCCGUUUAguagaugguuguacauuguuucaaaaugguacccuagugacuacaaagccc
(((((((..(((((((((.(((.((((((.(..((((......))))....).)))))).))))))))))))..)))))))

Structure
       CA         U   U      A --ua    gu 
gggcuuu  AGUCACUAG GGU CCGUUU g    gaug  u
|||||||  ||||||||| ||| |||||| |    ||||   
cccgaaa  ucagugauc cca gguaaa c    uuac  g
       ca         -   u      a uuug    au 


Annotation confidence Not enough data
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Genome context
chrX: 34881360-34881440 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from bta-mir-224
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-224

Accession MIMAT0009271
Description Bos taurus bta-miR-224 mature miRNA
Sequence 8 - CAAGUCACUAGUGGUUCCGUUUA - 30
Evidence experimental
cloned [3]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  3. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125