miRBase entry: bta-mir-219-1

Stem-loop bta-mir-219-1


Accession
MI0009781
Description
Bos taurus bta-mir-219-1 precursor miRNA
Gene family
MIPF0000044; mir-219

Literature search
6 open access papers mention bta-mir-219-1
(9 sentences)

Sequence

197 reads, 3 reads per million, 39 experiments
acucaggagcuucgccacUGAUUGUCCAAACGCAAUUCUUguacgagucugcggccaaccgAGAAUUGUGGCUGGACAUCUGuggcugagcucugg
.....(((((((.(((((.(((.(((((..(((((((((((...(.(((...))))...)))))))))))..)))))))).))))).)))))))..

Structure
acuca       c     U   U     AA           uac a   u 
     ggagcuu gccac GAU GUCCA  CGCAAUUCUUg   g guc  
     ||||||| ||||| ||| |||||  |||||||||||   | ||| g
     ucucgag cgguG CUA CAGGU  GUGUUAAGAgc   c cgg  
---gg       u     U   -     CG           caa -   c 


Annotation confidence Not enough data
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Genome context
chr11: 99257286-99257381 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-219-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-219-3p

Accession MIMAT0012547
Description Bos taurus bta-miR-219-3p mature miRNA
Sequence 62 - AGAAUUGUGGCUGGACAUCUG - 82
Evidence experimental
cloned [3-4]

Mature bta-miR-219-5p

Accession MIMAT0009269
Description Bos taurus bta-miR-219-5p mature miRNA
Sequence 19 - UGAUUGUCCAAACGCAAUUCUU - 40
Evidence

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19267191
    Identification and characteristics of cattle microRNAs by homology searching and small RNA cloning
    "Long JE, Chen HX"
    "Biochem Genet (2009) 47:329-343

  3. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  4. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125