Stem-loop sequence bta-mir-206

AccessionMI0009772 (change log)
DescriptionBos taurus miR-206 stem-loop
Gene family MIPF0000038; mir-1
Literature search

16 open access papers mention bta-mir-206
(93 sentences)

Stem-loop 
   u    c  a                     cc     -    u 
5'  gcuu cc aggccacaugcuucuuuauau  ccaua cgga u
    |||| || |||||||||||||||||||||  ||||| ||||  
3'  cgag gg uuuggugugugaaggaaugua  gguau guuu a
   g    c  c                     -a     c    c
Get sequence
Deep sequencing
724 reads, 16.7 reads per million, 6 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Btau_5.0.1; GCA_000003205.6) Overlapping transcripts
chr23: 24353667-24353752 [+]
intergenic
Clustered miRNAs
< 10kb from bta-mir-206
bta-mir-206chr23: 24353667-24353752 [+]
bta-mir-133bchr23: 24357763-24357846 [+]
Database links

Mature sequence bta-miR-206

Accession MIMAT0009260
Sequence

53 -  

uggaauguaaggaagugugugg

 - 74

Get sequence
Deep sequencing724 reads, 6 experiments
Evidence experimental; Array [3], qRT-PCR [3], cloned [4]
Predicted targets

References

1
PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2
PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).
3
PMID:19170227 "Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach" Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M Mol Reprod Dev. 76:665-677(2009).
4
PMID:19758457 "Characterization of bovine miRNAs by sequencing and bioinformatics analysis" Jin W, Grant JR, Stothard P, Moore SS, Guan LL BMC Mol Biol. 10:90(2009).