miRBase entry: bta-mir-199a-2

Stem-loop bta-mir-199a-2


Accession
MI0009770
Description
Bos taurus bta-mir-199a-2 precursor miRNA
Gene family
MIPF0000040; mir-199

Literature search
24 open access papers mention bta-mir-199a-2
(81 sentences)

Sequence

309187 reads, 3202 reads per million, 67 experiments
gccaaCCCAGUGUUCAGACUACCUGUUcagggggcucugaauguguACAGUAGUCUGCACAUUGGUUAggc
(((...(((((((.((((((((.((((((((....)))))......))))))))))).)))))))...)))

Structure
   aaC       U        C   ------     g 
gcc   CCAGUGU CAGACUAC UGU      Ucagg g
|||   ||||||| |||||||| |||      |||||  
cgg   GGUUACA GUCUGAUG ACA      agucu g
   AUU       C        -   ugugua     c 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr7: 16580964-16581034 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-199a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-199a-5p

Accession MIMAT0003544
Description Bos taurus bta-miR-199a-5p mature miRNA
Sequence 6 - CCCAGUGUUCAGACUACCUGUU - 27
Evidence experimental
cloned [1-2]

Mature bta-miR-199a-3p

Accession MIMAT0003746
Description Bos taurus bta-miR-199a-3p mature miRNA
Sequence 47 - ACAGUAGUCUGCACAUUGGUUA - 68
Evidence experimental
cloned [1-2]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 17306260
    Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
    "Gu Z, Eleswarapu S, Jiang H"
    "FEBS Lett (2007) 581:981-988

  3. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125