miRBase entry: bta-mir-197

Stem-loop bta-mir-197


Accession
MI0009769
Description
Bos taurus bta-mir-197 precursor miRNA
Gene family
MIPF0000123; mir-197

Literature search
2 open access papers mention bta-mir-197
(4 sentences)

Sequence

7579 reads, 111 reads per million, 71 experiments
ggggcugugccggguagagagggcagugggagguaagagcucuucacccUUCACCACCUUCUCCACCCAGCagggccagca
..((((.(((.((((.(((((((..(((((.((((((....))).))).)))))..))))))).)))).))).))))....

Structure
--gg    g   c    a       ca     a   -   a 
    ggcu ugc gggu gagaggg  guggg ggu aag g
    |||| ||| |||| |||||||  ||||| ||| |||  
    ccgg aCG CCCA CUCUUCC  CACUU cca uuc c
acga    g   A    C       AC     c   c   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr3: 34176846-34176926 [-]

Database links

Mature bta-miR-197

Accession MIMAT0009257
Description Bos taurus bta-miR-197 mature miRNA
Sequence 50 - UUCACCACCUUCUCCACCCAGC - 71
Evidence experimental
cloned [3]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  3. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125