miRBase entry: bta-mir-196a-1

Stem-loop bta-mir-196a-1


Accession
MI0009767
Description
Bos taurus bta-mir-196a-1 precursor miRNA
Gene family
MIPF0000031; mir-196

Literature search
21 open access papers mention bta-mir-196a-1
(108 sentences)

Sequence

3392 reads, 118 reads per million, 40 experiments
ugaacuggaacugcugagugaauUAGGUAGUUUCAUGUUGUUGGGccuggauuucugaacacaacgacauuaaaccacccgacucacggcaguuacugcucc
......(((((((((..((((.((.(((.((((.((((((((((..(.........)..).))))))))).)))).))).)).))))))))))).)).....

Structure
ugaacu  -       ga    a  A   A    C         - Gc ugg 
      gg aacugcu  guga uU GGU GUUU AUGUUGUUG G  c   a
      || |||||||  |||| || ||| |||| ||||||||| |  |   u
      uc uugacgg  cacu ag cca caaa uacagcaac c  g   u
-ccucg  a       --    c  c   c    u         a aa ucu 


Annotation confidence High
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Genome context
chr19: 38661613-38661714 [+]

Database links

Mature bta-miR-196a

Accession MIMAT0009255
Description Bos taurus bta-miR-196a mature miRNA
Sequence 24 - UAGGUAGUUUCAUGUUGUUGGG - 45
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125