miRBase entry: bta-mir-188

Stem-loop bta-mir-188


Accession
MI0009760
Description
Bos taurus bta-mir-188 precursor miRNA
Gene family
MIPF0000113; mir-188

Literature search
3 open access papers mention bta-mir-188
(4 sentences)

Sequence

276 reads, 10 reads per million, 63 experiments
ugcucccucucucaCAUCCCUUGCAUGGUGGAGGGUgagcuuucugaaaaccccucccacaugcaggguuugcaggauggugagcc
.((((((..(((..((..(((((((((..((((((....(.....).....))))))..)))))))))..))..))).)).)))).

Structure
u    -  uc   ca  UC         GU      -Ugag u 
 gcuc cc  ucu  CA  CCUUGCAUG  GGAGGG     c u
 |||| ||  |||  ||  |||||||||  ||||||     | u
 cgag gg  agg  gu  gggacguac  ccuccc     g c
c    u  -u   ac  uu         ac      caaaa u 


Annotation confidence High
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Genome context
chrX: 93935739-93935824 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from bta-mir-188
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-188

Accession MIMAT0009249
Description Bos taurus bta-miR-188 mature miRNA
Sequence 15 - CAUCCCUUGCAUGGUGGAGGGU - 36
Evidence experimental
Array [3], qRT-PCR [3]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19170227
    Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
    "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
    "Mol Reprod Dev (2009) 76:665-677

  3. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125