miRBase entry: bta-mir-187

Stem-loop bta-mir-187


Accession
MI0009759
Description
Bos taurus bta-mir-187 precursor miRNA
Gene family
MIPF0000078; mir-187


Sequence

17 reads, 5 reads per million, 13 experiments
ggccgggcuccccacgacacggugugagaccucgggcuacaacacgggacccgggcgcugcuccgaccccUCGUGUCUUGUGUUGCAGCCGGagggacgcaaguccgca
.((.(((((.............((((...((((.((((.((((((((((((.(((((......)).)))...).))))))))))).)))).))))..))))))))))).

Structure
g  c     ccccacgacacgg    aga    g    a           - --c   -  cu 
 gc gggcu             ugug   ccuc ggcu caacacgggac c   ggg cg  g
 || |||||             ||||   |||| |||| ||||||||||| |   ||| ||   
 cg ccuga             acgc   ggaG CCGA GUUGUGUUCUG G   ccc gc  c
a  -     -------------    -ag    G    C           U CUc   a  cu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr24: 21595499-21595607 [+]

Database links

Mature bta-miR-187

Accession MIMAT0009248
Description Bos taurus bta-miR-187 mature miRNA
Sequence 71 - UCGUGUCUUGUGUUGCAGCCGG - 92
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125