miRBase entry: bta-mir-183

Stem-loop bta-mir-183


Accession
MI0009756
Description
Bos taurus bta-mir-183 precursor miRNA
Gene family
MIPF0000066; mir-183

Literature search
5 open access papers mention bta-mir-183
(46 sentences)

Sequence

7927 reads, 126 reads per million, 72 experiments
cugugUAUGGCACUGGUAGAAUUCACUGugaacagucucggucagugaauuaccgaagggccauaaacag
((((.((((((.((((((..(((((((((((......)))..))))))))))))..)).)))))).))))

Structure
    g      A  --    GA        --   ac 
cugu UAUGGC CU  GGUA  AUUCACUG  uga  a
|||| |||||| ||  ||||  ||||||||  |||   
gaca auaccg ga  ccau  uaagugac  gcu  g
    a      g  ag    --        ug   cu 


Annotation confidence High
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Genome context
chr4: 94724660-94724729 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from bta-mir-183
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-183

Accession MIMAT0009245
Description Bos taurus bta-miR-183 mature miRNA
Sequence 6 - UAUGGCACUGGUAGAAUUCACUG - 28
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125