miRBase entry: bta-mir-182

Stem-loop bta-mir-182


Accession
MI0009755
Description
Bos taurus bta-mir-182 precursor miRNA
Gene family
MIPF0000116; mir-182

Literature search
11 open access papers mention bta-mir-182
(43 sentences)

Sequence

68384 reads, 1309 reads per million, 78 experiments
cgccgccgccugccucccaccauuUUUGGCAAUGGUAGAACUCACACUggugagguaaugggauccggugguucuagacuugccaacuauggugcgagggcuuggccagca
.((.((((....((((.((((((..(((((((...((((((...((((((..............))))))))))))...)))))))..)))))).))))...))))..)).

Structure
c  -c    ccug    c      uU       UGG      UCA      ugaggu 
 gc  gccg    ccuc caccau  UUGGCAA   UAGAAC   CACUgg      a
 ||  ||||    |||| ||||||  |||||||   ||||||   ||||||       
 cg  cggu    ggag guggua  aaccguu   aucuug   guggcc      a
a  ac    -ucg    c      uc       cag      ---      uagggu 


Annotation confidence Not enough data
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Genome context
chr4: 94719929-94720039 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from bta-mir-182
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-182

Accession MIMAT0009244
Description Bos taurus bta-miR-182 mature miRNA
Sequence 25 - UUUGGCAAUGGUAGAACUCACACU - 48
Evidence experimental
Array [3], qRT-PCR [3]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19170227
    Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
    "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
    "Mol Reprod Dev (2009) 76:665-677

  3. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125