Stem-loop sequence bta-mir-182

AccessionMI0009755 (change log)
DescriptionBos taurus miR-182 stem-loop
Gene family MIPF0000116; mir-182
Literature search

11 open access papers mention bta-mir-182
(43 sentences)

Stem-loop 
   cgcc  -c   -u   uc -      uu       u -g      uca      ugaggu 
5'     gc  gcc  gcc  c caccau  uuggcaa g  uagaac   cacugg      a
       ||  |||  |||  | ||||||  ||||||| |  ||||||   ||||||       
3'     cg  cgg  cgg  g guggua  aaccguu c  aucuug   guggcc      a
   ---a  ac   uu   ga c      uc       - ag      ---      uagggu
Get sequence
Deep sequencing
84508 reads, 1.3e+03 reads per million, 78 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Btau_5.0.1; GCA_000003205.6) Overlapping transcripts
chr4: 94719929-94720039 [-]
intergenic
Clustered miRNAs
< 10kb from bta-mir-182
bta-mir-183chr4: 94724660-94724729 [-]
bta-mir-96chr4: 94724422-94724524 [-]
bta-mir-182chr4: 94719929-94720039 [-]
Database links

Mature sequence bta-miR-182

Accession MIMAT0009244
Sequence

25 -  

uuuggcaaugguagaacucacacu

 - 48

Get sequence
Deep sequencing84501 reads, 78 experiments
Evidence experimental; Array [3], qRT-PCR [3]
Predicted targets

References

1
PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2
PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).
3
PMID:19170227 "Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach" Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M Mol Reprod Dev. 76:665-677(2009).