miRBase entry: bta-mir-154a

Stem-loop bta-mir-154a


Accession
MI0009751
Description
Bos taurus bta-mir-154a precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
9 open access papers mention bta-mir-154a
(58 sentences)

Sequence

81 reads, 10 reads per million, 42 experiments
gcggaacuugaagaUAGGUUAUCCGUGUAGCCUUCGcuuuacuugugacgaaucauacacgguucaccuauuuuuuaguaccaa
..((.(((.((((((((((...(((((((...(((((.........).))))...)))))))...)))))))))).))).))..

Structure
gc  a   u          UAU       GCC    - uuu 
  gg acu gaagaUAGGU   CCGUGUA   UUCG c   a
  || ||| ||||||||||   |||||||   |||| |   c
  cc uga uuuuuaucca   ggcacau   aagc g   u
aa  a   u          cuu       acu    a ugu 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr21: 67876412-67876495 [+]
Clustered miRNAs
20 other miRNAs are < 10 kb from bta-mir-154a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-154a

Accession MIMAT0009240
Description Bos taurus bta-miR-154a mature miRNA
Sequence 15 - UAGGUUAUCCGUGUAGCCUUCG - 36
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125