Stem-loop sequence bta-mir-147

AccessionMI0009747 (change log)
DescriptionBos taurus miR-147 stem-loop
Gene family MIPF0000105; mir-147
Literature search

3 open access papers mention bta-mir-147
(12 sentences)

Stem-loop 
   --  u    c   ug   a  c         --  ---   g 
5'   ua gaau uag  gaa ca uucugcaca  gg   cua a
     || |||| |||  ||| || |||||||||  ||   ||| u
3'   au uuua auc  cuu gu aaggcgugu  cc   ggu u
   gg  u    c   gu   c  a         ga  aua   a
Get sequence
Deep sequencing
4481 reads, 23.9 reads per million, 67 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (Btau_5.0.1; GCA_000003205.6) Overlapping transcripts
chr10: 65449944-65450023 [-]
sense
ENSBTAT00000005987 ; bta-mir-147-201; 3'UTR (exon 5)
Database links

Mature sequence bta-miR-147

Accession MIMAT0009237
Sequence

49 -  

gugugcggaaaugcuucugcua

 - 70

Get sequence
Deep sequencing4434 reads, 67 experiments
Evidence by similarity; MI0010371
Predicted targets

References

1
PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2
PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).