miRBase entry: bta-mir-144

Stem-loop bta-mir-144


Accession
MI0009744
Description
Bos taurus bta-mir-144 precursor miRNA
Gene family
MIPF0000093; mir-144

Literature search
7 open access papers mention bta-mir-144
(19 sentences)

Sequence

1320 reads, 30 reads per million, 64 experiments
gggcccugacugggauaucaucauauacuguaaguuugcaacgagacacUACAGUAUAGAUGAUGUACUAGuccgggugcuccc
(.((((.((((((.((((((((.(((((((((.((((......))))..))))))))))))))))).)))))).)))).)....

Structure
---- g    u      g        a         -a    gc 
    g gccc gacugg auaucauc uauacugua  guuu  a
    | |||| |||||| |||||||| |||||||||  ||||   
    c uggg cuGAUC UGUAGUAG AUAUGACAU  caga  a
cccu g    c      A        -         ca    gc 


Annotation confidence High
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Genome context
chr19: 20923025-20923108 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-144
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-144

Accession MIMAT0009234
Description Bos taurus bta-miR-144 mature miRNA
Sequence 50 - UACAGUAUAGAUGAUGUACUAG - 71
Evidence experimental
cloned [3]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  3. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125