Stem-loop sequence bta-mir-144

Accession

MI0009744 (change log)

Description

Bos taurus miR-144 stem-loop

Gene family

MIPF0000093; mir-144

Literature search

7 open access papers mention bta-mir-144
(19 sentences)

Stem-loop

   ---- g    u      g        a         -a    gc 
5'     g gccc gacugg auaucauc uauacugua  guuu  a
       | |||| |||||| |||||||| |||||||||  ||||   
3'     c uggg cugauc uguaguag auaugacau  caga  a
   cccu g    c      a        -         ca    gc 

Deep sequencing

1549 reads, 0 reads per million, 65 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr19: 20923025-20923108 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-144

• bta-mir-144: chr19: 20923025-20923108 [-]
• bta-mir-451: chr19: 20922863-20922933 [-]

Database links

• EntrezGene:MIR144
• miRBase Tracker:MI0009744

Mature sequence bta-miR-144

• Accession: MIMAT0009234
• Sequence: 50 - uacaguauagaugauguacuag - 71
• Deep sequencing: 1175 reads, 64 experiments
• Evidence: experimental; cloned [3]
• Predicted targets:
  • TargetScanVert:bta-miR-144

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).
3. PMID:19758457 "Characterization of bovine miRNAs by sequencing and bioinformatics analysis" Jin W, Grant JR, Stothard P, Moore SS, Guan LL BMC Mol Biol. 10:90(2009).