Stem-loop bta-mir-138-1

Accession

MI0009741

Description

Bos taurus bta-mir-138-1 precursor miRNA

Gene family

MIPF0000075; mir-138

Literature search

9 open access papers mention bta-mir-138-1
(15 sentences)

Sequence

3269 reads, 44 reads per million, 66 experiments

cuggcacggugcgguggggcAGCUGGUGUUGUGAAUCAGGCCGucgccaaucagagaacggcuacuucacaacaccagggucacaccccaccccagg
((((...((((.((((.(((..(((((((((((((...(((((((..........).))))))..))))))))))))).))).)))).)))))))).

Structure

-    cac    c    g   AG             UCA      - gcca 
 cugg   ggug ggug ggc  CUGGUGUUGUGAA   GGCCGu c    a
 ||||   |||| |||| |||  |||||||||||||   |||||| |     
 gacc   ccac ccac cug  gaccacaacacuu   ucggca g    u
g    ---    c    a   -g             -ca      a agac 

Annotation confidence Not enough data

Genome context

chr22: 14939860-14939956 [+]

Mature bta-miR-138

• Accession: MIMAT0003813
• Description: Bos taurus bta-miR-138 mature miRNA
• Sequence: 21 - AGCUGGUGUUGUGAAUCAGGCCG - 43
• Evidence: experimental ; cloned [2]

References

1. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125