Stem-loop sequence bta-mir-133a-2

Accession

MI0009732 (change log)

Description

Bos taurus miR-133a-2 stem-loop

Gene family

MIPF0000029; mir-133

Literature search

23 open access papers mention bta-mir-133a-2
(97 sentences)

Stem-loop

   -      uuu    g       aa  u  a        gccuc 
5'  caaugc   gcua agcuggu  aa gg accaaauc     u
    ||||||   |||| |||||||  || || ||||||||      
3'  guuacg   cgau ucgacca  uu cc ugguuuag     u
   a      uau    g       ac  c  c        guaac 

Deep sequencing

35691 reads, 259 reads per million, 66 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr24: 34932166-34932252 [+]
• Overlapping transcripts:

  antisense

  ENSBTAT00000009822 ; MIB1-201; intron 12

Clustered miRNAs

< 10kb from bta-mir-133a-2

• bta-mir-1-2: chr24: 34928847-34928931 [+]
• bta-mir-133a-2: chr24: 34932166-34932252 [+]

Database links

• EntrezGene:MIR133A-2
• miRBase Tracker:MI0009732

Mature sequence bta-miR-133a

• Accession: MIMAT0009225
• Sequence: 52 - uuugguccccuucaaccagcug - 73
• Deep sequencing: 71044 reads, 66 experiments
• Evidence: experimental; cloned [3]
• Predicted targets:
  • TargetScanVert:bta-miR-133a

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).
3. PMID:19758457 "Characterization of bovine miRNAs by sequencing and bioinformatics analysis" Jin W, Grant JR, Stothard P, Moore SS, Guan LL BMC Mol Biol. 10:90(2009).