Stem-loop sequence bta-mir-130b

Accession

MI0009731 (change log)

Description

Bos taurus miR-130b stem-loop

Gene family

MIPF0000034; mir-130

Literature search

11 open access papers mention bta-mir-130b
(169 sentences)

Stem-loop

         c    ca       cc         a  g   gc 
5' ggccug cuga  cucuuuc  uguugcacu cu ugc  c
   |||||| ||||  |||||||  ||||||||| || |||  c
3' ccggac ggcu  gggaaag  guaacguga ga acg  c
         u    ac       ua         c  -   gu 

Deep sequencing

17751 reads, 74.6 reads per million, 71 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr17: 74305539-74305620 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-130b

• bta-mir-301b: chr17: 74305850-74305944 [-]
• bta-mir-130b: chr17: 74305539-74305620 [-]

Database links

• EntrezGene:MIR130B
• RNAcentral:URS000075CDDA_9913
• miRBase Tracker:MI0009731

Mature sequence bta-miR-130b

• Accession: MIMAT0009224
• Sequence: 51 - cagugcaaugaugaaagggcau - 72
• Deep sequencing: 16059 reads, 70 experiments
• Evidence: experimental; Array [3], qRT-PCR [3]
• Predicted targets:
  • TargetScanVert:bta-miR-130b

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).
3. PMID:19170227 "Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach" Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M Mol Reprod Dev. 76:665-677(2009).