miRBase entry: bta-mir-130b

Stem-loop bta-mir-130b


Accession
MI0009731
Description
Bos taurus bta-mir-130b precursor miRNA
Gene family
MIPF0000034; mir-130

Literature search
11 open access papers mention bta-mir-130b
(172 sentences)

Sequence

10107 reads, 140 reads per million, 68 experiments
ggccugccugacacucuuucccuguugcacuacugugcgccccuggcaagCAGUGCAAUGAUGAAAGGGCAUcggucaggcc
((((((.((((..(((((((..(((((((((.((.(((.......))))).)))))))))..)))))))..)))).))))))

Structure
      c    ca       cc         a  g   gc 
ggccug cuga  cucuuuc  uguugcacu cu ugc  c
|||||| ||||  |||||||  ||||||||| || |||  c
ccggac ggcU  GGGAAAG  GUAACGUGA ga acg  c
      u    AC       UA         C  -   gu 


Annotation confidence High
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Genome context
chr17: 74305539-74305620 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-130b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-130b

Accession MIMAT0009224
Description Bos taurus bta-miR-130b mature miRNA
Sequence 51 - CAGUGCAAUGAUGAAAGGGCAU - 72
Evidence experimental
Array [3], qRT-PCR [3]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19170227
    Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
    "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
    "Mol Reprod Dev (2009) 76:665-677

  3. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125