miRBase entry: bta-mir-130a

Stem-loop bta-mir-130a


Accession
MI0009730
Description
Bos taurus bta-mir-130a precursor miRNA
Gene family
MIPF0000034; mir-130

Literature search
13 open access papers mention bta-mir-130a
(29 sentences)

Sequence

39072 reads, 398 reads per million, 67 experiments
ugcugcgggccggagcucuuuucacauugugcuacugucugcgccugucacuagCAGUGCAAUGUUAAAAGGGCAUuggcugugcagcg
.((((((((((((.((((((((.((((((((((.(((...((....))...))).)))))))))).)))))))).)))))).)))))).

Structure
u      -      a        c          a   ucu  g 
 gcugcg ggccgg gcucuuuu acauugugcu cug   gc c
 |||||| |||||| |||||||| |||||||||| |||   ||  
 cgacgu ucgguU CGGGAAAA UGUAACGUGA gau   ug c
g      g      A        U          C   cac  u 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr15: 82581436-82581524 [+]

Database links

Mature bta-miR-130a

Accession MIMAT0009223
Description Bos taurus bta-miR-130a mature miRNA
Sequence 55 - CAGUGCAAUGUUAAAAGGGCAU - 76
Evidence experimental
cloned [3]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  3. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125