Stem-loop sequence bta-mir-129-2

Accession

MI0009729 (change log)

Description

Bos taurus miR-129-2 stem-loop

Gene family

MIPF0000073; mir-129

Literature search

6 open access papers mention bta-mir-129-2
(12 sentences)

Stem-loop

   --cu             -       c   cu      ---     acau 
5'     gcccuucgcgaau cuuuuug ggu  gggcuu   gcugu    a
       ||||||||||||| ||||||| |||  ||||||   |||||     
3'     cgggaggcgcuua gaaaaac cca  cccgaa   cgaua    a
   cacg             c       c   uu      ggc     acuc 

Deep sequencing

1600 reads, 1.54 reads per million, 65 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr15: 74898231-74898324 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bta-mir-129-2

• bta-mir-6528: chr15: 74896952-74897033 [+]
• bta-mir-129-2: chr15: 74898231-74898324 [+]

Database links

• EntrezGene:MIR129-2
• RNAcentral:URS000075C6C8_9913
• miRBase Tracker:MI0009729

Mature sequence bta-miR-129-5p

• Accession: MIMAT0009221
• Sequence: 16 - cuuuuugcggucugggcuugcu - 37
• Deep sequencing: 1259 reads, 61 experiments
• Evidence: experimental; cloned [3]
• Predicted targets:
  • TargetScanVert:bta-miR-129-5p

Mature sequence bta-miR-129-3p

• Accession: MIMAT0009222
• Sequence: 58 - aagcccuuaccccaaaaagcau - 79
• Deep sequencing: 322 reads, 57 experiments
• Evidence: experimental; cloned [3]
• Predicted targets:
  • TargetScanVert:bta-miR-129-3p

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2. PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).
3. PMID:19758457 "Characterization of bovine miRNAs by sequencing and bioinformatics analysis" Jin W, Grant JR, Stothard P, Moore SS, Guan LL BMC Mol Biol. 10:90(2009).