Stem-loop sequence bta-mir-105b

AccessionMI0009722 (change log)
DescriptionBos taurus miR-105b stem-loop
Gene family MIPF0000074; mir-105
Literature search

2 open access papers mention bta-mir-105b
(2 sentences)

Stem-loop 
   ugu         u  a          -   u     g ug 
5'    gcaucgugg ca augcucagac ucc uggug c  c
      ||||||||| || |||||||||| ||| ||||| |  u
3'    ugugguauc gu uacgaguuug agg accac g  u
   auc         -  g          u   u     - ua
Get sequence
Deep sequencing
99 reads, 0 reads per million, 50 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Btau_5.0.1; GCA_000003205.6) Overlapping transcripts
chrX: 35238515-35238594 [-]
sense
ENSBTAT00000008798 ; GABRA3-201; intron 1
Clustered miRNAs
< 10kb from bta-mir-105b
bta-mir-105bchrX: 35238515-35238594 [-]
bta-mir-767chrX: 35237578-35237682 [-]
bta-mir-105achrX: 35236061-35236141 [-]
Database links

Mature sequence bta-miR-105b

Accession MIMAT0009216
Sequence

13 -  

ucaaaugcucagacuccuuggu

 - 34

Get sequence
Deep sequencing75 reads, 43 experiments
Evidence by similarity; MI0010378
Predicted targets

References

1
PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2
PMID:18945293 "Annotation of 390 bovine miRNA genes by sequence similarity with other species" Strozzi F, Mazza R, Malinverni R, Williams JL Anim Genet. 40:125(2009).