miRBase entry: bta-mir-1-1

Stem-loop bta-mir-1-1


Accession
MI0009719
Description
Bos taurus bta-mir-1-1 precursor miRNA
Gene family
MIPF0000038; mir-1

Literature search
29 open access papers mention bta-mir-1-1
(133 sentences)

Sequence

15077 reads, 574 reads per million, 65 experiments
gcuugggaaacauacuucuuuaugugcccauauggaccugcuaagcuaUGGAAUGUAAAGAAGUAUGUAUuucagg
.(((((((.((((((((((((((((..((((((((.....)))...))))).)))))))))))))))).)))))))

Structure
g       a                gc     ---   a 
 cuuggga acauacuucuuuaugu  ccaua   ugg c
 ||||||| ||||||||||||||||  |||||   ||| c
 ggacuuU UGUAUGAAGAAAUGUA  GGUau   auc u
-       A                -A     cga   g 


Annotation confidence Not enough data
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Genome context
chr13: 55456488-55456563 [-]

Database links

Mature bta-miR-1

Accession MIMAT0009214
Description Bos taurus bta-miR-1 mature miRNA
Sequence 49 - UGGAAUGUAAAGAAGUAUGUAU - 70
Evidence experimental
cloned [3]

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39

  2. PubMed ID: 19758457
    Characterization of bovine miRNAs by sequencing and bioinformatics analysis
    Jin W, Grant JR, Stothard P, Moore SS, Guan LL
    BMC Mol Biol (2009) 10:90

  3. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125