Stem-loop sequence osa-MIR1319a

Accession

MI0009716 (change log)

Previous IDs

osa-MIR1319

Description

Oryza sativa miR1319 stem-loop

Gene family

MIPF0001448; MIR1319

Literature search

2 open access papers mention osa-MIR1319a
(2 sentences)

Stem-loop

   -u               uaa             uc                 g      aa 
5'   augggugucgguuuu   gaaaaaaccggca  uguaauauauuauaggu ucgguu  u
     |||||||||||||||   |||||||||||||  ||||||||||||||||| ||||||  u
3'   uauccacagccaaaa   uuuuuuuggccgu  auauuauauaauaucca agccaa  a
   uc               ---             ga                 g      aa 

Deep sequencing

155 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr11: 702071-702191 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0009716

Mature sequence osa-miR1319a

• Accession: MIMAT0009136
• Previous IDs: osa-miR1319
• Sequence: 25 - aaccggcaucuguaauauauuaua - 48
• Deep sequencing: 43 reads, 2 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS00002E3270_39947

References

1. PMID:18323537 "Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa" Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ Genome Res. 18:571-584(2008).