miRBase entry: pta-MIR1309

Stem-loop pta-MIR1309


Accession
MI0009706
Description
Pinus taeda pta-MIR1309 precursor miRNA


Sequence

uccaguuggacagagcuacaguuggaucagauuUGAUGGCCCUUUUGAAGGACAaaaagccuccacuuccguauguuuaucacccaccccagcguccaucgauuaugugauuuggucagcuuccucuacgggcuuucguucagagcaaauucaagaugaagagaacuccugugaaaccgggauucauguacauugaugaacuccugugaaaccuggguuuaucaugauagcaugaaaacuuagggaggauugaacuaugcagugucguuugagugggguuucauuuuaucuuguauaaaaaaagaaaugccuucuggagc
(((((..((.((((...(((..((((..((...((..(((..((((........)))))))..))))))))..)))...))....((((((.(.((...((((..((((...(((((((..(((((((((((..(((.((((..............))))..)))..))))))....((((((((((........))))).))))).....(((((((((.(((((....)))))))))))))))))))))).))))))))..))))...))))))))).........((((.........))))..))))..)))))..

Structure
--     uu  a  ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------  gcu   gu    uc  auu  AU   CC    GAA 
  uccag  gg ca                                                                                                                                                                                                                                  ga   aca  ugga  ag   UG  GGC  UUUU   G
  |||||  || ||                                                                                                                                                                                                                                  ||   |||  ||||  ||   ||  |||  ||||    
  agguc  cc gu                                                                                                                                                                                                                                  cu   ugu  gccu  uc   ac  ccg  aaaa   G
cg     uu  -  aaagaaaaaaauauguucuauuuuacuuuggggugaguuugcugugacguaucaaguuaggagggauucaaaaguacgauaguacuauuuggguccaaaguguccucaaguaguuacauguacuuagggccaaaguguccucaagagaaguagaacuuaaacgagacuugcuuucgggcaucuccuucgacugguuuaguguauuagcuaccugcgaccccaccca  auu   au    --  ---  cu   --    ACA 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature pta-miR1309

Accession MIMAT0009126
Description Pinus taeda pta-miR1309 mature miRNA
Sequence 34 - UGAUGGCCCUUUUGAAGGACA - 54
Evidence experimental
454 [1]

References

  1. PubMed ID: 18323537
    Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
    "Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ"
    "Genome Res (2008) 18:571-584