miRBase entry: dya-mir-312

Stem-loop dya-mir-312

Accession

MI0009683

Description

Drosophila yakuba dya-mir-312 precursor miRNA

Gene family

MIPF0000573; mir-312

Sequence

gcuuCGGUUCGUCCCAGGAGCAAUUCUgcacuauuaaagcuagUAUUGCACUUGAGACGGCCGGAuu
..((((((.((((.((((.(((((.((((.........)).)).))))).)))).))))))))))..

Structure

gc      U    C    A     U  -  acu 
  uuCGGU CGUC CAGG GCAAU CU gc   a
  |||||| |||| |||| ||||| || ||   u
  AGGCCG GCAG GUUC CGUUA ga cg   u
uu      -    A    A     U  u  aaa

Annotation confidence Not enough data

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Genome context

chr2R: 12724700-12724766 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from dya-mir-312

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dya-miR-312-3p

Accession	MIMAT0009108
Description	Drosophila yakuba dya-miR-312-3p mature miRNA
Sequence	44 - UAUUGCACUUGAGACGGCCGGA - 65
Evidence	experimental Illumina [2]

Mature dya-miR-312-5p

Accession	MIMAT0037351
Description	Drosophila yakuba dya-miR-312-5p mature miRNA
Sequence	5 - CGGUUCGUCCCAGGAGCAAUUCU - 27
Evidence	experimental Illumina [2]

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250