miRBase entry: dya-mir-281-1

Stem-loop dya-mir-281-1

Accession

MI0009666

Description

Drosophila yakuba dya-mir-281-1 precursor miRNA

Gene family

MIPF0000087; mir-46

Sequence

cgaauaagugaauaAAGAGAGCUGUCCGUCGACAGUccagaauucauuuaauaucacUGUCAUGGAAUUGCUCUCUUUGUauaauauucg
((((((.....(((((((((((..(((((.((((((...................)))))))))))...)))))))))))....))))))

Structure

      aguga           -UG     C      ccagaauu 
cgaaua     auaAAGAGAGC   UCCGU GACAGU        c
||||||     |||||||||||   ||||| ||||||        a
gcuuau     UGUUUCUCUCG   AGGUA CUGUca        u
      -aaua           UUA     -      cuauaauu

Annotation confidence Not enough data

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Genome context

chr2R: 8893348-8893437 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dya-mir-281-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dya-miR-281-3p

Accession	MIMAT0009061
Description	Drosophila yakuba dya-miR-281-3p mature miRNA
Sequence	58 - UGUCAUGGAAUUGCUCUCUUUGU - 80
Evidence	not_experimental

Mature dya-miR-281-1-5p

Accession	MIMAT0009060
Description	Drosophila yakuba dya-miR-281-1-5p mature miRNA
Sequence	15 - AAGAGAGCUGUCCGUCGACAGU - 36
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218