miRBase entry: dya-mir-311a

Stem-loop dya-mir-311a


Accession
MI0009664
Description
Drosophila yakuba dya-mir-311a precursor miRNA
Gene family
MIPF0000566; mir-310


Sequence

uagauaguuuugCGGACGGUAUCUGCGUCAAUAUUuccuuguuagaauaUAUUGCACAUUCACCGGCCUGAaaauaucaa
..((((.((((..((.((((...((.(.(((((((((.......))).))))))).))...)))).))..))))))))..

Structure
ua    g    gC  A    AUC  C U      -   cu 
  gaua uuuu  GG CGGU   UG G CAAUAU Uuc  u
  |||| ||||  || ||||   || | |||||| |||  g
  cuau aaaA  CC GCCA   AC C GUUAUa aag  u
aa    -    GU  G    CUU  A -      u   au 


Annotation confidence Not enough data
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Genome context
chr2R: 12724827-12724906 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from dya-mir-311a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dya-miR-311a-3p

Accession MIMAT0009091
Description Drosophila yakuba dya-miR-311a-3p mature miRNA
Sequence 50 - UAUUGCACAUUCACCGGCCUGA - 71
Evidence experimental
Illumina [2]

Mature dya-miR-311a-5p

Accession MIMAT0037349
Description Drosophila yakuba dya-miR-311a-5p mature miRNA
Sequence 13 - CGGACGGUAUCUGCGUCAAUAUU - 35
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218

  2. PubMed ID: 24985917
    Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
    "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
    "Genome Res (2014) 24:1236-1250