miRBase entry: dvi-mir-92a

Stem-loop dvi-mir-92a

Accession

MI0009547

Description

Drosophila virilis dvi-mir-92a precursor miRNA

Gene family

MIPF0000013; mir-25

Literature search

1 open access papers mention dvi-mir-92a
(7 sentences)

Sequence

aacugcuugcAGGACGGGAAGGUGUCAACGUUuugcuuuaugaaucaaaCAUUGCACUUGUCCCGGCCUAUgagcgguuug
(((((((((.(((.((((((((((.(((.((((.............)))).)))))))).))))).))).)))))))))..

Structure

--         c   A     -     U   C    ugcuu 
  aacugcuug AGG CGGGA AGGUG CAA GUUu     u
  ||||||||| ||| ||||| ||||| ||| ||||     a
  uuggcgagU UCC GCCCU UUCAC GUU Caaa     u
gu         A   G     G     -   A    cuaag

Annotation confidence Not enough data

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Genome context

scaffold_12855: 6880792-6880872 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dvi-mir-92a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-92a-3p

Accession	MIMAT0008979
Description	Drosophila virilis dvi-miR-92a-3p mature miRNA
Sequence	50 - CAUUGCACUUGUCCCGGCCUAU - 71
Evidence	experimental Illumina [2]

Mature dvi-miR-92a-5p

Accession	MIMAT0032099
Description	Drosophila virilis dvi-miR-92a-5p mature miRNA
Sequence	11 - AGGACGGGAAGGUGUCAACGUU - 32
Evidence	experimental Illumina [2]

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218

PubMed ID: 24448446
Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"RNA (2014) 20:360-372