miRBase entry: dvi-mir-304

Stem-loop dvi-mir-304


Accession
MI0009544
Description
Drosophila virilis dvi-mir-304 precursor miRNA
Gene family
MIPF0000308; mir-304


Sequence

gcagcauugauUAAUCUCAAUUUGUAAAUGUGAgcgauuuuaaaguauuugacgcacuCACUUUGCAAUUGGAGAUUGCUcgagauugc
((((..((((.(((((((...(((((((.(((((.(.(.(((((...))))).)).))))))))))))...))))))).))))..))))

Structure
    ca    u       AAU       U     c a u     g 
gcag  uuga UAAUCUC   UUGUAAA GUGAg g u uuaaa  
||||  |||| |||||||   ||||||| ||||| | | ||||| u
cguu  agcU GUUAGAG   AACGUUU CACuc c g aguuu  
    ag    C       GUU       -     a - c     a 


Annotation confidence Not enough data
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Genome context
scaffold_12970: 2048753-2048841 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dvi-mir-304
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dvi-miR-304-5p

Accession MIMAT0008976
Description Drosophila virilis dvi-miR-304-5p mature miRNA
Sequence 12 - UAAUCUCAAUUUGUAAAUGUGA - 33
Evidence experimental
Illumina [2]

Mature dvi-miR-304-3p

Accession MIMAT0032096
Description Drosophila virilis dvi-miR-304-3p mature miRNA
Sequence 59 - CACUUUGCAAUUGGAGAUUGCU - 80
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218

  2. PubMed ID: 24448446
    Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "RNA (2014) 20:360-372