Stem-loop sequence dvi-mir-79

Accession

MI0009543 (change log)

Description

Drosophila virilis miR-79 stem-loop

Gene family

MIPF0000014; mir-9

Stem-loop

   ac      cu    u        cgc       g     uagauu 
5'   gccgca  gccg ugcuuugg   uuuagcu uauga      u
     ||||||  |||| ||||||||   ||||||| |||||       
3'   cggugu  cggu acgaaacc   agaucga auacu      g
   ac      cu    u        auu       a     ucauaa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (DroVir3): scaffold_12963: 12863042-12863133 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dvi-mir-79

• dvi-mir-9c: scaffold_12963: 12863849-12863937 [-]
• dvi-mir-306: scaffold_12963: 12863214-12863292 [-]
• dvi-mir-79: scaffold_12963: 12863042-12863133 [-]
• dvi-mir-9b: scaffold_12963: 12862861-12862949 [-]

Database links

• miRBase Tracker:MI0009543

Mature sequence dvi-miR-79-5p

• Accession: MIMAT0032095
• Sequence: 17 - gcuuuggcgcuuuagcuguauga - 39
• Evidence: experimental; Illumina [2]

Mature sequence dvi-miR-79-3p

• Accession: MIMAT0008975
• Previous IDs: dvi-miR-79
• Sequence: 57 - uaaagcuagauuaccaaagcau - 78
• Evidence: experimental; Illumina [2]

References

1. PMID:17994087 "Evolution of genes and genomes on the Drosophila phylogeny" Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie Nature. 450:203-218(2007).
2. PMID:24448446 "Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis" Ninova M, Ronshaugen M, Griffiths-Jones S RNA. 20:360-372(2014).