miRBase entry: dvi-mir-79

Stem-loop dvi-mir-79

Accession

MI0009543

Description

Drosophila virilis dvi-mir-79 precursor miRNA

Gene family

MIPF0000014; mir-9

Sequence

acgccgcacugccguuGCUUUGGCGCUUUAGCUGUAUGAuagauuugaauacuucaUAAAGCUAGAUUACCAAAGCAUuggcucuguggcca
..((((((..((((.((((((((...(((((((.(((((..............))))).)))))))...)))))))).))))..))))))..

Structure

ac      cu    u        CGC       G     uagauu 
  gccgca  gccg uGCUUUGG   UUUAGCU UAUGA      u
  ||||||  |||| ||||||||   ||||||| |||||       
  cggugu  cggu ACGAAACC   AGAUCGA AUacu      g
ac      cu    U        AUU       A     ucauaa

Annotation confidence Not enough data

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Genome context

scaffold_12963: 12863042-12863133 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from dvi-mir-79

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-79-3p

Accession	MIMAT0008975
Description	Drosophila virilis dvi-miR-79-3p mature miRNA
Sequence	57 - UAAAGCUAGAUUACCAAAGCAU - 78
Evidence	experimental Illumina [2]

Mature dvi-miR-79-5p

Accession	MIMAT0032095
Description	Drosophila virilis dvi-miR-79-5p mature miRNA
Sequence	17 - GCUUUGGCGCUUUAGCUGUAUGA - 39
Evidence	experimental Illumina [2]

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218

PubMed ID: 24448446
Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"RNA (2014) 20:360-372