miRBase entry: dvi-mir-6-1

Stem-loop dvi-mir-6-1


Accession
MI0009537
Description
Drosophila virilis dvi-mir-6-1 precursor miRNA
Gene family
MIPF0000119; mir-6


Sequence

aguagAGAGAAUAGACGCUGUGCUGUAuguuuugcguauggucuaUAUCACAGUGGCUGUUCUUUUUgua
..((((((((((((.(((((((((((((((...)))))))).......))))))).))))))))))))..

Structure
ag            A       -------        u 
  uagAGAGAAUAG CGCUGUG       CUGUAugu  
  |||||||||||| |||||||       |||||||| u
  gUUUUUCUUGUC GUGACAC       gguaugcg  
au            G       UAUaucu        u 


Annotation confidence Not enough data
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Genome context
scaffold_12875: 4112632-4112701 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from dvi-mir-6-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dvi-miR-6-3p

Accession MIMAT0008923
Description Drosophila virilis dvi-miR-6-3p mature miRNA
Sequence 46 - UAUCACAGUGGCUGUUCUUUUU - 67
Evidence experimental
Illumina [2]

Mature dvi-miR-6-1-5p

Accession MIMAT0032090
Description Drosophila virilis dvi-miR-6-1-5p mature miRNA
Sequence 6 - AGAGAAUAGACGCUGUGCUGUA - 27
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218

  2. PubMed ID: 24448446
    Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "RNA (2014) 20:360-372