Stem-loop dvi-bantam

Accession

MI0009533

Description

Drosophila virilis dvi-bantam precursor miRNA

Gene family

MIPF0000153; bantam

Literature search

1 open access papers mention dvi-bantam
(3 sentences)

Sequence

auuugacuacgaaaCCGGUUUUCGAUUUGGUUUGACUguauuucauacaagUGAGAUCAUUUUGAAAGCUGAUUuugucaa
........((((((.((((((((((..((((((.(((((((...)))).))).))))))..)))))))))).))))))...

Structure

auuugacu      C          UU      G   -    u 
        acgaaa CGGUUUUCGA  UGGUUU ACU guau  
        |||||| ||||||||||  |||||| ||| |||| u
        uguuUU GUCGAAAGUU  ACUAGA Uga caua  
-----aac      A          UU      G   a    c 

Annotation confidence Not enough data

Genome context

scaffold_13049: 5805321-5805401 [+]

Mature dvi-bantam-3p

• Accession: MIMAT0008966
• Description: Drosophila virilis dvi-bantam-3p mature miRNA
• Sequence: 52 - UGAGAUCAUUUUGAAAGCUGAUU - 74
• Evidence: experimental ; Illumina [2]

Mature dvi-bantam-5p

• Accession: MIMAT0032086
• Description: Drosophila virilis dvi-bantam-5p mature miRNA
• Sequence: 15 - CCGGUUUUCGAUUUGGUUUGACU - 37
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24448446
   Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
   "Ninova M, Ronshaugen M, Griffiths-Jones S"
   "RNA (2014) 20:360-372