Stem-loop sequence dvi-mir-309

Accession

MI0009526 (change log)

Description

Drosophila virilis miR-309 stem-loop

Gene family

MIPF0000140; mir-3

Literature search

2 open access papers mention dvi-mir-309
(15 sentences)

Stem-loop

           gu      ug      uu   cag  u u 
5' auuauaug  aaacuu  uucagu  ugc   gc c u
   ||||||||  ||||||  ||||||  |||   || | u
3' uaauaugc  uuugaa  ggguca  acg   cg g u
           ug      gu      cu   ---  u u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (DroVir3): scaffold_12875: 4111809-4111882 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dvi-mir-309

• dvi-mir-309: scaffold_12875: 4111809-4111882 [+]
• dvi-mir-3: scaffold_12875: 4111962-4112026 [+]
• dvi-mir-286: scaffold_12875: 4112127-4112227 [+]
• dvi-mir-4: scaffold_12875: 4112313-4112393 [+]
• dvi-mir-5: scaffold_12875: 4112468-4112537 [+]
• dvi-mir-6-1: scaffold_12875: 4112632-4112701 [+]
• dvi-mir-6-2: scaffold_12875: 4112784-4112863 [+]
• dvi-mir-6-3: scaffold_12875: 4112960-4113032 [+]

Database links

• miRBase Tracker:MI0009526

Mature sequence dvi-miR-309-5p

• Accession: MIMAT0032081
• Sequence: 7 - ugguaaacuuuguucaguuuug - 28
• Evidence: experimental; Illumina [2]

Mature sequence dvi-miR-309-3p

• Accession: MIMAT0008958
• Previous IDs: dvi-miR-309
• Sequence: 49 - ucacugggugaaguuugucgua - 70
• Evidence: experimental; Illumina [2]

References

1. PMID:17994087 "Evolution of genes and genomes on the Drosophila phylogeny" Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie Nature. 450:203-218(2007).
2. PMID:24448446 "Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis" Ninova M, Ronshaugen M, Griffiths-Jones S RNA. 20:360-372(2014).