miRBase entry: dvi-mir-3

Stem-loop dvi-mir-3


Accession
MI0009525
Description
Drosophila virilis dvi-mir-3 precursor miRNA
Gene family
MIPF0000140; mir-3

Literature search
1 open access papers mention dvi-mir-3
(1 sentences)

Sequence

ugGGAUGCAUUUUGUGCGGUUAUGucugccuccaaaacccaUCACUGGGCAAAGUGUGUCUCAaa
(((((((((((((((.((((.(((...............))).)))).)))))))))))))))..

Structure
--               G    U   ucugcc 
  ugGGAUGCAUUUUGU CGGU AUG      u
  ||||||||||||||| |||| |||      c
  ACUCUGUGUGAAACG GUCA Uac      c
aa               G    C   ccaaaa 


Annotation confidence Not enough data
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Genome context
scaffold_12875: 4111962-4112026 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from dvi-mir-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dvi-miR-3-3p

Accession MIMAT0008957
Description Drosophila virilis dvi-miR-3-3p mature miRNA
Sequence 42 - UCACUGGGCAAAGUGUGUCUCA - 63
Evidence experimental
Illumina [2]

Mature dvi-miR-3-5p

Accession MIMAT0032080
Description Drosophila virilis dvi-miR-3-5p mature miRNA
Sequence 3 - GGAUGCAUUUUGUGCGGUUAUG - 24
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218

  2. PubMed ID: 24448446
    Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "RNA (2014) 20:360-372