Stem-loop sequence dvi-mir-286

Accession

MI0009517 (change log)

Description

Drosophila virilis miR-286 stem-loop

Gene family

MIPF0000225; mir-286

Stem-loop

   --         aaug    u   -    a          uucaaaca     cca 
5'   uuaaaauua    gcga ugu cggu uggucgcuuu        auaua   u
     |||||||||    |||| ||| |||| ||||||||||        |||||    
3'   aauuuuaau    ugcu aca gcca aucagugaaa        uauau   u
   aa         aucg    c   a    g          --------     cua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (DroVir3): scaffold_12875: 4112127-4112227 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dvi-mir-286

• dvi-mir-309: scaffold_12875: 4111809-4111882 [+]
• dvi-mir-3: scaffold_12875: 4111962-4112026 [+]
• dvi-mir-286: scaffold_12875: 4112127-4112227 [+]
• dvi-mir-4: scaffold_12875: 4112313-4112393 [+]
• dvi-mir-5: scaffold_12875: 4112468-4112537 [+]
• dvi-mir-6-1: scaffold_12875: 4112632-4112701 [+]
• dvi-mir-6-2: scaffold_12875: 4112784-4112863 [+]
• dvi-mir-6-3: scaffold_12875: 4112960-4113032 [+]

Database links

• miRBase Tracker:MI0009517

Mature sequence dvi-miR-286-5p

• Accession: MIMAT0032074
• Sequence: 13 - ggcgauugucgguauggucgc - 33
• Evidence: experimental; Illumina [2]

Mature sequence dvi-miR-286-3p

• Accession: MIMAT0008950
• Previous IDs: dvi-miR-286
• Sequence: 67 - ugacuagaccgaacacucgugcu - 89
• Evidence: experimental; Illumina [2]

References

1. PMID:17994087 "Evolution of genes and genomes on the Drosophila phylogeny" Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie Nature. 450:203-218(2007).
2. PMID:24448446 "Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis" Ninova M, Ronshaugen M, Griffiths-Jones S RNA. 20:360-372(2014).