miRBase entry: dvi-mir-281-1

Stem-loop dvi-mir-281-1

Accession

MI0009514

Description

Drosophila virilis dvi-mir-281-1 precursor miRNA

Gene family

MIPF0000087; mir-46

Sequence

cgaauaagugaauaAAGAGAGCUGUCCGUCGACAGUccaguaacaaauguaauacUGUCAUGGAAUUGCUCUCUUUGUaugauauucg
((((((.....(((((((((((..(((((.((((((...((.((....)).)))))))))))))...)))))))))))....))))))

Structure

      aguga           -UG     C      cca  a  a 
cgaaua     auaAAGAGAGC   UCCGU GACAGU   gu ac a
||||||     |||||||||||   ||||| ||||||   || ||  
gcuuau     UGUUUCUCUCG   AGGUA CUGUca   ua ug a
      -agua           UUA     -      ---  a  u

Annotation confidence Not enough data

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Genome context

scaffold_12875: 19829928-19830015 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dvi-mir-281-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-281-3p

Accession	MIMAT0008927
Description	Drosophila virilis dvi-miR-281-3p mature miRNA
Sequence	56 - UGUCAUGGAAUUGCUCUCUUUGU - 78
Evidence	experimental Illumina [2]

Mature dvi-miR-281-1-5p

Accession	MIMAT0008926
Description	Drosophila virilis dvi-miR-281-1-5p mature miRNA
Sequence	15 - AAGAGAGCUGUCCGUCGACAGU - 36
Evidence	experimental Illumina [2]

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218

PubMed ID: 24448446
Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"RNA (2014) 20:360-372