Stem-loop sequence dvi-mir-9c

Accession

MI0009491 (change log)

Description

Drosophila virilis miR-9c stem-loop

Gene family

MIPF0000014; mir-9

Literature search

2 open access papers mention dvi-mir-9c
(4 sentences)

Stem-loop

       uu    uuu         ucu    g     u uuuu   a 
5' auuu  gcug   cuuugguau   agcu uagau g    uac g
   ||||  ||||   |||||||||   |||| ||||| |    ||| u
3' uaaa  cgac   gaaaccaua   ucga aucua c    aug u
       uu    cuc         uuu    a     - ---u   u 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (DroVir3): scaffold_12963: 12863849-12863937 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dvi-mir-9c

• dvi-mir-9c: scaffold_12963: 12863849-12863937 [-]
• dvi-mir-306: scaffold_12963: 12863214-12863292 [-]
• dvi-mir-79: scaffold_12963: 12863042-12863133 [-]
• dvi-mir-9b: scaffold_12963: 12862861-12862949 [-]

Database links

• miRBase Tracker:MI0009491

Mature sequence dvi-miR-9c-5p

• Accession: MIMAT0008924
• Previous IDs: dvi-miR-9c
• Sequence: 13 - ucuuugguauucuagcuguaga - 34
• Evidence: experimental; Illumina [2]

Mature sequence dvi-miR-9c-3p

• Accession: MIMAT0032054
• Sequence: 58 - uaaagcuuuuauaccaaagcu - 78
• Evidence: experimental; Illumina [2]

References

1. PMID:17994087 "Evolution of genes and genomes on the Drosophila phylogeny" Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie Nature. 450:203-218(2007).
2. PMID:24448446 "Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis" Ninova M, Ronshaugen M, Griffiths-Jones S RNA. 20:360-372(2014).