Stem-loop sequence dvi-mir-6-2

Accession

MI0009490 (change log)

Description

Drosophila virilis miR-6-2 stem-loop

Gene family

MIPF0000119; mir-6

Stem-loop

         c       u  ug   c      acu  aua     
5' uaaccg agggaac gc  cug ugauau   gu   gauu 
   |||||| ||||||| ||  ||| ||||||   ||   ||| a
3' guuggu uuucuug cg  gac acuaua   ua   cuau 
         u       u  gu   -      ccu  --g     

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (DroVir3): scaffold_12875: 4112784-4112863 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dvi-mir-6-2

• dvi-mir-309: scaffold_12875: 4111809-4111882 [+]
• dvi-mir-3: scaffold_12875: 4111962-4112026 [+]
• dvi-mir-286: scaffold_12875: 4112127-4112227 [+]
• dvi-mir-4: scaffold_12875: 4112313-4112393 [+]
• dvi-mir-5: scaffold_12875: 4112468-4112537 [+]
• dvi-mir-6-1: scaffold_12875: 4112632-4112701 [+]
• dvi-mir-6-2: scaffold_12875: 4112784-4112863 [+]
• dvi-mir-6-3: scaffold_12875: 4112960-4113032 [+]

Database links

• miRBase Tracker:MI0009490

Mature sequence dvi-miR-6-2-5p

• Accession: MIMAT0032053
• Sequence: 8 - agggaacugcugcugcugauaua - 30
• Evidence: experimental; Illumina [2]

Mature sequence dvi-miR-6-3p

• Accession: MIMAT0008923
• Previous IDs: dvi-miR-6
• Sequence: 54 - uaucacaguggcuguucuuuuu - 75
• Evidence: experimental; Illumina [2]

References

1. PMID:17994087 "Evolution of genes and genomes on the Drosophila phylogeny" Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie Nature. 450:203-218(2007).
2. PMID:24448446 "Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis" Ninova M, Ronshaugen M, Griffiths-Jones S RNA. 20:360-372(2014).